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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

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        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-08-02, 18:19 based on data in: /g/scb2/zeller/carroll/zru/quast_fastqc


        General Statistics

        Showing 384/384 rows and 6/7 columns.
        Sample NameN50 (Kbp)Length (Mbp)% Dups% GCLengthM Seqs
        BOV_ANAT_39_02-21-08_R8-0842
        59.3Kbp
        4.7Mbp
        BOV_ANAT_39_02-21-08_R8-0842_1
        15.0%
        52%
        222 bp
        0.5
        BOV_ANAT_39_02-21-08_R8-0842_2
        9.6%
        52%
        186 bp
        0.5
        BOV_ANAT_39_02-21-08_R8-0847
        77.6Kbp
        4.7Mbp
        BOV_ANAT_39_02-21-08_R8-0847_1
        21.3%
        52%
        221 bp
        0.8
        BOV_ANAT_39_02-21-08_R8-0847_2
        13.3%
        52%
        182 bp
        0.8
        BOV_ANAT_56_04-19-08_R8-0968
        95.6Kbp
        4.9Mbp
        BOV_ANAT_56_04-19-08_R8-0968_1
        15.1%
        52%
        228 bp
        0.4
        BOV_ANAT_56_04-19-08_R8-0968_2
        10.4%
        52%
        187 bp
        0.4
        BOV_ANAT_56_04-19-08_R8-0969
        251.4Kbp
        4.8Mbp
        BOV_ANAT_56_04-19-08_R8-0969_1
        29.5%
        51%
        197 bp
        1.8
        BOV_ANAT_56_04-19-08_R8-0969_2
        29.0%
        51%
        193 bp
        1.8
        BOV_CERO_35_10-02-08_R8-2685
        218.9Kbp
        4.7Mbp
        BOV_CERO_35_10-02-08_R8-2685_1
        39.7%
        51%
        195 bp
        1.9
        BOV_CERO_35_10-02-08_R8-2685_2
        36.9%
        51%
        185 bp
        1.9
        BOV_CERO_62_11-12-08_R8-2903
        268.8Kbp
        4.7Mbp
        BOV_CERO_62_11-12-08_R8-2903_1
        39.0%
        52%
        222 bp
        1.9
        BOV_CERO_62_11-12-08_R8-2903_2
        37.9%
        52%
        216 bp
        1.9
        BOV_KENT_14_11-06-07_R6-0942
        334.9Kbp
        4.7Mbp
        BOV_KENT_14_11-06-07_R6-0942_1
        19.7%
        52%
        227 bp
        0.9
        BOV_KENT_14_11-06-07_R6-0942_2
        18.8%
        52%
        221 bp
        0.9
        BOV_KENT_14_12-13-07_R8-0083
        234.0Kbp
        4.7Mbp
        BOV_KENT_14_12-13-07_R8-0083_1
        19.4%
        52%
        227 bp
        0.8
        BOV_KENT_14_12-13-07_R8-0083_2
        18.0%
        52%
        222 bp
        0.8
        BOV_KENT_16_02-13-08_R8-0836
        301.3Kbp
        4.7Mbp
        BOV_KENT_16_02-13-08_R8-0836_1
        19.5%
        52%
        227 bp
        0.9
        BOV_KENT_16_02-13-08_R8-0836_2
        17.3%
        52%
        216 bp
        0.9
        BOV_KENT_16_02-13-08_R8-0838
        218.9Kbp
        4.7Mbp
        BOV_KENT_16_02-13-08_R8-0838_1
        24.4%
        52%
        224 bp
        1.2
        BOV_KENT_16_02-13-08_R8-0838_2
        19.5%
        52%
        203 bp
        1.2
        BOV_KENT_16_04-03-08_R8-0967
        167.9Kbp
        4.7Mbp
        BOV_KENT_16_04-03-08_R8-0967_1
        20.8%
        52%
        227 bp
        1.0
        BOV_KENT_16_04-03-08_R8-0967_2
        17.5%
        52%
        208 bp
        1.0
        BOV_KENT_16_05-21-08_R8-1485
        484.7Kbp
        4.7Mbp
        BOV_KENT_16_05-21-08_R8-1485_1
        33.6%
        51%
        202 bp
        2.1
        BOV_KENT_16_05-21-08_R8-1485_2
        33.1%
        51%
        198 bp
        2.1
        BOV_KENT_17_02-12-08_R8-0823
        244.9Kbp
        4.7Mbp
        BOV_KENT_17_02-12-08_R8-0823_1
        31.3%
        52%
        222 bp
        1.7
        BOV_KENT_17_02-12-08_R8-0823_2
        28.3%
        52%
        210 bp
        1.7
        BOV_KENT_17_11-07-07_R6-0957
        250.0Kbp
        4.7Mbp
        BOV_KENT_17_11-07-07_R6-0957_1
        19.0%
        52%
        224 bp
        0.8
        BOV_KENT_17_11-07-07_R6-0957_2
        17.5%
        52%
        215 bp
        0.8
        BOV_KENT_17_12-12-07_R8-0211
        161.5Kbp
        4.7Mbp
        BOV_KENT_17_12-12-07_R8-0211_1
        20.2%
        52%
        225 bp
        0.9
        BOV_KENT_17_12-12-07_R8-0211_2
        17.4%
        52%
        211 bp
        0.9
        BOV_KENT_19_11-19-07_R6-0966
        244.9Kbp
        4.7Mbp
        BOV_KENT_19_11-19-07_R6-0966_1
        22.6%
        52%
        193 bp
        1.2
        BOV_KENT_19_11-19-07_R6-0966_2
        21.5%
        52%
        189 bp
        1.2
        BOV_KENT_42_03-13-08_R8-0863
        408.3Kbp
        4.8Mbp
        BOV_KENT_42_03-13-08_R8-0863_1
        17.4%
        52%
        228 bp
        0.8
        BOV_KENT_42_03-13-08_R8-0863_2
        16.4%
        52%
        221 bp
        0.8
        BOV_MELA_01_10-02-07_R6-0951
        244.9Kbp
        4.8Mbp
        BOV_MELA_01_10-02-07_R6-0951_1
        18.1%
        52%
        227 bp
        0.8
        BOV_MELA_01_10-02-07_R6-0951_2
        17.3%
        52%
        222 bp
        0.8
        BOV_MELA_01_10-30-07_R6-0802
        336.5Kbp
        4.8Mbp
        BOV_MELA_01_10-30-07_R6-0802_1
        16.2%
        52%
        226 bp
        0.7
        BOV_MELA_01_10-30-07_R6-0802_2
        15.2%
        52%
        218 bp
        0.7
        BOV_MELA_01_10-30-07_R6-0803
        207.1Kbp
        4.8Mbp
        BOV_MELA_01_10-30-07_R6-0803_1
        16.7%
        52%
        225 bp
        0.7
        BOV_MELA_01_10-30-07_R6-0803_2
        15.2%
        52%
        214 bp
        0.7
        BOV_MELA_01_10-30-07_R6-0810
        208.4Kbp
        4.8Mbp
        BOV_MELA_01_10-30-07_R6-0810_1
        17.8%
        52%
        222 bp
        0.8
        BOV_MELA_01_10-30-07_R6-0810_2
        17.0%
        52%
        215 bp
        0.8
        BOV_MELA_01_12-11-07_R8-0198
        240.4Kbp
        4.8Mbp
        BOV_MELA_01_12-11-07_R8-0198_1
        11.7%
        52%
        227 bp
        0.4
        BOV_MELA_01_12-11-07_R8-0198_2
        10.3%
        52%
        220 bp
        0.4
        BOV_NEWP_17_11-07-07_R6-0956
        172.3Kbp
        5.0Mbp
        BOV_NEWP_17_11-07-07_R6-0956_1
        21.9%
        52%
        227 bp
        0.7
        BOV_NEWP_17_11-07-07_R6-0956_2
        20.3%
        52%
        217 bp
        0.7
        BOV_NEWP_17_12-12-07_R8-0206
        300.2Kbp
        5.0Mbp
        BOV_NEWP_17_12-12-07_R8-0206_1
        31.3%
        52%
        223 bp
        1.2
        BOV_NEWP_17_12-12-07_R8-0206_2
        27.8%
        52%
        209 bp
        1.2
        BOV_NEWP_35_10-02-08_R8-2688
        503.8Kbp
        4.9Mbp
        BOV_NEWP_35_10-02-08_R8-2688_1
        30.4%
        50%
        200 bp
        1.5
        BOV_NEWP_35_10-02-08_R8-2688_2
        27.7%
        50%
        188 bp
        1.5
        BOV_NEWP_62_10-14-08_R8-2874
        496.1Kbp
        4.9Mbp
        BOV_NEWP_62_10-14-08_R8-2874_1
        30.8%
        51%
        213 bp
        1.4
        BOV_NEWP_62_10-14-08_R8-2874_2
        24.4%
        51%
        189 bp
        1.4
        BOV_NEWP_62_11-12-08_R8-2900
        504.2Kbp
        4.9Mbp
        BOV_NEWP_62_11-12-08_R8-2900_1
        36.3%
        51%
        218 bp
        2.2
        BOV_NEWP_62_11-12-08_R8-2900_2
        35.4%
        51%
        212 bp
        2.2
        BOV_TYPH_17_12-12-07_R8-0208
        191.7Kbp
        4.7Mbp
        BOV_TYPH_17_12-12-07_R8-0208_1
        25.6%
        52%
        210 bp
        1.3
        BOV_TYPH_17_12-12-07_R8-0208_2
        22.5%
        52%
        199 bp
        1.3
        BOV_TYPH_22_01-18-08_R8-0227
        214.2Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0227_1
        17.9%
        52%
        224 bp
        0.8
        BOV_TYPH_22_01-18-08_R8-0227_2
        14.1%
        52%
        202 bp
        0.8
        BOV_TYPH_22_01-18-08_R8-0228
        107.9Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0228_1
        25.8%
        52%
        224 bp
        1.3
        BOV_TYPH_22_01-18-08_R8-0228_2
        22.7%
        52%
        211 bp
        1.3
        BOV_TYPH_22_01-18-08_R8-0229
        75.4Kbp
        4.8Mbp
        BOV_TYPH_22_01-18-08_R8-0229_1
        23.3%
        52%
        224 bp
        1.1
        BOV_TYPH_22_01-18-08_R8-0229_2
        19.6%
        52%
        211 bp
        1.1
        BOV_TYPH_22_01-18-08_R8-0231
        95.1Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0231_1
        22.5%
        52%
        224 bp
        1.1
        BOV_TYPH_22_01-18-08_R8-0231_2
        20.8%
        52%
        217 bp
        1.1
        BOV_TYPH_22_01-18-08_R8-0271
        275.5Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0271_1
        14.0%
        52%
        220 bp
        0.6
        BOV_TYPH_22_01-18-08_R8-0271_2
        12.4%
        52%
        208 bp
        0.6
        BOV_TYPH_22_01-18-08_R8-0273
        187.9Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0273_1
        30.9%
        52%
        217 bp
        1.8
        BOV_TYPH_22_01-18-08_R8-0273_2
        29.1%
        52%
        210 bp
        1.8
        BOV_TYPH_22_03-14-08_R8-0865
        216.2Kbp
        4.9Mbp
        BOV_TYPH_22_03-14-08_R8-0865_1
        21.1%
        51%
        216 bp
        1.0
        BOV_TYPH_22_03-14-08_R8-0865_2
        18.6%
        51%
        203 bp
        1.0
        BOV_TYPH_25_01-15-08_R8-0233
        126.2Kbp
        5.0Mbp
        BOV_TYPH_25_01-15-08_R8-0233_1
        15.5%
        52%
        230 bp
        0.7
        BOV_TYPH_25_01-15-08_R8-0233_2
        13.6%
        52%
        220 bp
        0.7
        BOV_TYPH_25_11-20-07_R6-0978
        143.3Kbp
        5.0Mbp
        BOV_TYPH_25_11-20-07_R6-0978_1
        27.1%
        52%
        179 bp
        1.8
        BOV_TYPH_25_11-20-07_R6-0978_2
        26.0%
        52%
        177 bp
        1.8
        BOV_TYPH_25_11-20-07_R6-0979
        266.9Kbp
        4.9Mbp
        BOV_TYPH_25_11-20-07_R6-0979_1
        18.8%
        52%
        212 bp
        0.8
        BOV_TYPH_25_11-20-07_R6-0979_2
        17.2%
        52%
        205 bp
        0.8
        BOV_TYPH_25_11-20-07_R6-0983
        81.8Kbp
        5.0Mbp
        BOV_TYPH_25_11-20-07_R6-0983_1
        18.6%
        52%
        220 bp
        0.8
        BOV_TYPH_25_11-20-07_R6-0983_2
        17.6%
        52%
        215 bp
        0.8
        ENV_ANAT_39_01-09-08_R8-0187
        403.1Kbp
        4.7Mbp
        ENV_ANAT_39_01-09-08_R8-0187_1
        23.7%
        51%
        205 bp
        0.9
        ENV_ANAT_39_01-09-08_R8-0187_2
        22.8%
        51%
        200 bp
        0.9
        ENV_ANAT_39_02-21-08_R8-0348
        209.1Kbp
        4.7Mbp
        ENV_ANAT_39_02-21-08_R8-0348_1
        21.9%
        52%
        231 bp
        0.8
        ENV_ANAT_39_02-21-08_R8-0348_2
        20.3%
        52%
        221 bp
        0.8
        ENV_ANAT_39_04-17-08_R8-0905
        468.8Kbp
        4.7Mbp
        ENV_ANAT_39_04-17-08_R8-0905_1
        32.5%
        51%
        200 bp
        1.6
        ENV_ANAT_39_04-17-08_R8-0905_2
        31.8%
        51%
        195 bp
        1.6
        ENV_ANAT_39_11-13-07_R6-0928
        91.1Kbp
        4.7Mbp
        ENV_ANAT_39_11-13-07_R6-0928_1
        17.7%
        52%
        218 bp
        0.7
        ENV_ANAT_39_11-13-07_R6-0928_2
        15.4%
        52%
        199 bp
        0.7
        ENV_ANAT_39_11-13-07_R6-0929
        240.8Kbp
        4.8Mbp
        ENV_ANAT_39_11-13-07_R6-0929_1
        24.8%
        52%
        224 bp
        1.2
        ENV_ANAT_39_11-13-07_R6-0929_2
        22.4%
        52%
        210 bp
        1.2
        ENV_ANAT_39_12-03-08_R8-2860
        387.1Kbp
        4.7Mbp
        ENV_ANAT_39_12-03-08_R8-2860_1
        24.5%
        52%
        239 bp
        0.9
        ENV_ANAT_39_12-03-08_R8-2860_2
        20.6%
        52%
        217 bp
        0.9
        ENV_ANAT_56_02-22-08_R8-0350
        159.5Kbp
        4.8Mbp
        ENV_ANAT_56_02-22-08_R8-0350_1
        18.5%
        52%
        219 bp
        0.8
        ENV_ANAT_56_02-22-08_R8-0350_2
        17.4%
        52%
        212 bp
        0.8
        ENV_ANAT_56_03-25-09_R8-3652
        169.7Kbp
        4.7Mbp
        ENV_ANAT_56_03-25-09_R8-3652_1
        22.6%
        52%
        204 bp
        1.3
        ENV_ANAT_56_03-25-09_R8-3652_2
        18.3%
        52%
        184 bp
        1.3
        ENV_ANAT_56_03-25-09_R8-3653
        200.0Kbp
        4.8Mbp
        ENV_ANAT_56_03-25-09_R8-3653_1
        22.0%
        51%
        207 bp
        1.1
        ENV_ANAT_56_03-25-09_R8-3653_2
        13.6%
        51%
        169 bp
        1.1
        ENV_ANAT_56_04-18-08_R8-0907
        305.7Kbp
        4.8Mbp
        ENV_ANAT_56_04-18-08_R8-0907_1
        27.2%
        51%
        200 bp
        1.7
        ENV_ANAT_56_04-18-08_R8-0907_2
        26.9%
        51%
        196 bp
        1.7
        ENV_ANAT_56_06-12-08_R8-1402
        415.4Kbp
        4.8Mbp
        ENV_ANAT_56_06-12-08_R8-1402_1
        41.5%
        52%
        203 bp
        3.3
        ENV_ANAT_56_06-12-08_R8-1402_2
        39.5%
        52%
        195 bp
        3.3
        ENV_CERO_62_01-22-09_R8-3412
        196.6Kbp
        4.7Mbp
        ENV_CERO_62_01-22-09_R8-3412_1
        19.9%
        52%
        236 bp
        0.7
        ENV_CERO_62_01-22-09_R8-3412_2
        18.2%
        52%
        221 bp
        0.7
        ENV_CERO_62_03-05-09_R8-3445
        166.9Kbp
        4.7Mbp
        ENV_CERO_62_03-05-09_R8-3445_1
        24.3%
        52%
        236 bp
        0.9
        ENV_CERO_62_03-05-09_R8-3445_2
        22.9%
        52%
        228 bp
        0.9
        ENV_CERO_62_04-16-09_R8-3664
        131.4Kbp
        4.7Mbp
        ENV_CERO_62_04-16-09_R8-3664_1
        27.5%
        52%
        236 bp
        1.1
        ENV_CERO_62_04-16-09_R8-3664_2
        25.5%
        52%
        225 bp
        1.1
        ENV_CERO_62_05-28-09_R8-4025
        69.4Kbp
        4.7Mbp
        ENV_CERO_62_05-28-09_R8-4025_1
        25.4%
        53%
        233 bp
        1.0
        ENV_CERO_62_05-28-09_R8-4025_2
        24.3%
        53%
        226 bp
        1.0
        ENV_CERO_62_07-09-09_R8-4030
        142.8Kbp
        4.7Mbp
        ENV_CERO_62_07-09-09_R8-4030_1
        26.8%
        52%
        224 bp
        1.2
        ENV_CERO_62_07-09-09_R8-4030_2
        25.5%
        52%
        212 bp
        1.2
        ENV_CERO_62_07-22-08_R8-1631
        168.7Kbp
        4.7Mbp
        ENV_CERO_62_07-22-08_R8-1631_1
        30.9%
        52%
        178 bp
        1.8
        ENV_CERO_62_07-22-08_R8-1631_2
        30.8%
        52%
        175 bp
        1.8
        ENV_CERO_62_07-22-08_R8-1632
        213.2Kbp
        4.7Mbp
        ENV_CERO_62_07-22-08_R8-1632_1
        31.0%
        52%
        239 bp
        1.4
        ENV_CERO_62_07-22-08_R8-1632_2
        29.2%
        52%
        229 bp
        1.4
        ENV_CERO_62_09-03-08_R8-2026
        222.6Kbp
        4.7Mbp
        ENV_CERO_62_09-03-08_R8-2026_1
        21.4%
        52%
        239 bp
        0.8
        ENV_CERO_62_09-03-08_R8-2026_2
        18.8%
        52%
        222 bp
        0.8
        ENV_CERO_62_10-14-08_R8-2818
        222.6Kbp
        4.7Mbp
        ENV_CERO_62_10-14-08_R8-2818_1
        27.6%
        52%
        236 bp
        1.1
        ENV_CERO_62_10-14-08_R8-2818_2
        25.9%
        52%
        226 bp
        1.1
        ENV_CERO_62_11-12-08_R8-2852
        210.3Kbp
        4.7Mbp
        ENV_CERO_62_11-12-08_R8-2852_1
        20.9%
        52%
        238 bp
        0.7
        ENV_CERO_62_11-12-08_R8-2852_2
        18.2%
        52%
        220 bp
        0.7
        ENV_CERO_62_12-11-08_R8-3138
        213.4Kbp
        4.7Mbp
        ENV_CERO_62_12-11-08_R8-3138_1
        21.0%
        52%
        238 bp
        0.7
        ENV_CERO_62_12-11-08_R8-3138_2
        16.0%
        52%
        208 bp
        0.7
        ENV_KENT_14_02-14-08_R8-0344
        274.4Kbp
        4.7Mbp
        ENV_KENT_14_02-14-08_R8-0344_1
        24.4%
        52%
        211 bp
        1.2
        ENV_KENT_14_02-14-08_R8-0344_2
        23.7%
        52%
        207 bp
        1.2
        ENV_KENT_14_08-30-08_R8-2016
        247.8Kbp
        4.7Mbp
        ENV_KENT_14_08-30-08_R8-2016_1
        24.6%
        52%
        229 bp
        1.2
        ENV_KENT_14_08-30-08_R8-2016_2
        15.6%
        52%
        184 bp
        1.2
        ENV_KENT_14_10-11-07_R6-0798
        144.5Kbp
        4.7Mbp
        ENV_KENT_14_10-11-07_R6-0798_1
        18.8%
        52%
        222 bp
        0.9
        ENV_KENT_14_10-11-07_R6-0798_2
        16.6%
        52%
        207 bp
        0.9
        ENV_KENT_16_09-09-08_R8-2031
        197.7Kbp
        4.7Mbp
        ENV_KENT_16_09-09-08_R8-2031_1
        18.7%
        52%
        229 bp
        0.8
        ENV_KENT_16_09-09-08_R8-2031_2
        15.6%
        52%
        210 bp
        0.8
        ENV_KENT_16_11-11-08_R8-2848
        247.7Kbp
        4.7Mbp
        ENV_KENT_16_11-11-08_R8-2848_1
        19.9%
        52%
        238 bp
        0.8
        ENV_KENT_16_11-11-08_R8-2848_2
        17.7%
        52%
        224 bp
        0.8
        ENV_KENT_16_12-04-07_R8-0061
        29.8Kbp
        4.7Mbp
        ENV_KENT_16_12-04-07_R8-0061_1
        25.6%
        53%
        223 bp
        1.2
        ENV_KENT_16_12-04-07_R8-0061_2
        23.7%
        53%
        211 bp
        1.2
        ENV_KENT_17_03-11-08_R8-0814
        247.7Kbp
        4.7Mbp
        ENV_KENT_17_03-11-08_R8-0814_1
        20.6%
        52%
        221 bp
        0.9
        ENV_KENT_17_03-11-08_R8-0814_2
        19.6%
        52%
        216 bp
        0.9
        ENV_KENT_17_03-11-08_R8-0815
        76.6Kbp
        4.8Mbp
        ENV_KENT_17_03-11-08_R8-0815_1
        16.9%
        52%
        221 bp
        0.8
        ENV_KENT_17_03-11-08_R8-0815_2
        13.9%
        52%
        199 bp
        0.8
        ENV_KENT_17_06-17-08_R8-1405
        265.7Kbp
        4.7Mbp
        ENV_KENT_17_06-17-08_R8-1405_1
        29.5%
        52%
        205 bp
        1.6
        ENV_KENT_17_06-17-08_R8-1405_2
        25.9%
        51%
        190 bp
        1.6
        ENV_KENT_17_07-27-08_R8-1641
        97.9Kbp
        4.7Mbp
        ENV_KENT_17_07-27-08_R8-1641_1
        19.1%
        52%
        232 bp
        0.8
        ENV_KENT_17_07-27-08_R8-1641_2
        18.4%
        52%
        227 bp
        0.8
        ENV_KENT_17_09-10-08_R8-2033
        89.8Kbp
        4.7Mbp
        ENV_KENT_17_09-10-08_R8-2033_1
        19.5%
        52%
        228 bp
        0.9
        ENV_KENT_17_09-10-08_R8-2033_2
        15.9%
        52%
        206 bp
        0.9
        ENV_KENT_17_10-11-07_R6-1000
        97.8Kbp
        4.7Mbp
        ENV_KENT_17_10-11-07_R6-1000_1
        11.8%
        52%
        215 bp
        0.5
        ENV_KENT_17_10-11-07_R6-1000_2
        10.1%
        52%
        196 bp
        0.5
        ENV_KENT_19_01-16-08_R8-0168
        244.9Kbp
        4.7Mbp
        ENV_KENT_19_01-16-08_R8-0168_1
        28.8%
        52%
        201 bp
        1.7
        ENV_KENT_19_01-16-08_R8-0168_2
        27.4%
        52%
        193 bp
        1.7
        ENV_KENT_19_03-13-08_R8-0817
        107.7Kbp
        4.7Mbp
        ENV_KENT_19_03-13-08_R8-0817_1
        19.5%
        52%
        218 bp
        1.0
        ENV_KENT_19_03-13-08_R8-0817_2
        13.0%
        52%
        180 bp
        1.0
        ENV_KENT_19_04-28-08_R8-0916
        250.1Kbp
        4.7Mbp
        ENV_KENT_19_04-28-08_R8-0916_1
        20.1%
        51%
        197 bp
        1.1
        ENV_KENT_19_04-28-08_R8-0916_2
        18.1%
        51%
        184 bp
        1.1
        ENV_KENT_19_04-28-08_R8-0917
        265.8Kbp
        4.7Mbp
        ENV_KENT_19_04-28-08_R8-0917_1
        26.8%
        52%
        205 bp
        1.5
        ENV_KENT_19_04-28-08_R8-0917_2
        21.5%
        51%
        182 bp
        1.5
        ENV_KENT_19_07-21-08_R8-1644
        205.5Kbp
        4.7Mbp
        ENV_KENT_19_07-21-08_R8-1644_1
        20.0%
        52%
        231 bp
        0.9
        ENV_KENT_19_07-21-08_R8-1644_2
        17.7%
        52%
        217 bp
        0.9
        ENV_KENT_19_10-02-08_R8-2813
        127.9Kbp
        4.7Mbp
        ENV_KENT_19_10-02-08_R8-2813_1
        24.8%
        52%
        187 bp
        1.4
        ENV_KENT_19_10-02-08_R8-2813_2
        17.5%
        51%
        158 bp
        1.4
        ENV_KENT_42_01-17-08_R8-0191
        191.5Kbp
        4.7Mbp
        ENV_KENT_42_01-17-08_R8-0191_1
        11.5%
        52%
        227 bp
        0.4
        ENV_KENT_42_01-17-08_R8-0191_2
        10.5%
        52%
        217 bp
        0.4
        ENV_KENT_42_04-23-08_R8-0913
        433.4Kbp
        4.7Mbp
        ENV_KENT_42_04-23-08_R8-0913_1
        27.1%
        51%
        189 bp
        1.7
        ENV_KENT_42_04-23-08_R8-0913_2
        26.0%
        51%
        183 bp
        1.7
        ENV_KENT_42_04-23-08_R8-0914
        484.6Kbp
        4.7Mbp
        ENV_KENT_42_04-23-08_R8-0914_1
        28.8%
        51%
        190 bp
        1.8
        ENV_KENT_42_04-23-08_R8-0914_2
        26.1%
        51%
        180 bp
        1.8
        ENV_KENT_42_07-23-08_R8-1640
        150.2Kbp
        4.7Mbp
        ENV_KENT_42_07-23-08_R8-1640_1
        20.3%
        52%
        231 bp
        0.9
        ENV_KENT_42_07-23-08_R8-1640_2
        19.7%
        52%
        226 bp
        0.9
        ENV_KENT_42_08-19-08_R8-2009
        197.8Kbp
        4.7Mbp
        ENV_KENT_42_08-19-08_R8-2009_1
        21.7%
        52%
        231 bp
        1.0
        ENV_KENT_42_08-19-08_R8-2009_2
        16.6%
        52%
        202 bp
        1.0
        ENV_KENT_42_09-17-08_R8-2236
        206.4Kbp
        4.7Mbp
        ENV_KENT_42_09-17-08_R8-2236_1
        28.0%
        51%
        168 bp
        2.1
        ENV_KENT_42_09-17-08_R8-2236_2
        28.4%
        51%
        168 bp
        2.1
        ENV_KENT_42_11-15-07_R6-0935
        228.1Kbp
        4.7Mbp
        ENV_KENT_42_11-15-07_R6-0935_1
        24.8%
        52%
        222 bp
        1.3
        ENV_KENT_42_11-15-07_R6-0935_2
        22.1%
        52%
        205 bp
        1.3
        ENV_MELA_01_01-10-08_R8-0165
        211.8Kbp
        4.8Mbp
        ENV_MELA_01_01-10-08_R8-0165_1
        23.2%
        52%
        226 bp
        1.2
        ENV_MELA_01_01-10-08_R8-0165_2
        21.0%
        52%
        211 bp
        1.2
        ENV_MELA_01_04-04-08_R8-0901
        173.8Kbp
        4.8Mbp
        ENV_MELA_01_04-04-08_R8-0901_1
        20.3%
        52%
        219 bp
        1.0
        ENV_MELA_01_04-04-08_R8-0901_2
        17.6%
        52%
        203 bp
        1.0
        ENV_MELA_01_05-08-08_R8-1381
        411.2Kbp
        4.8Mbp
        ENV_MELA_01_05-08-08_R8-1381_1
        22.7%
        51%
        192 bp
        1.4
        ENV_MELA_01_05-08-08_R8-1381_2
        22.4%
        51%
        188 bp
        1.4
        ENV_MELA_01_06-13-08_R8-1406
        492.5Kbp
        4.8Mbp
        ENV_MELA_01_06-13-08_R8-1406_1
        34.4%
        52%
        210 bp
        2.2
        ENV_MELA_01_06-13-08_R8-1406_2
        33.4%
        52%
        205 bp
        2.2
        ENV_MELA_01_07-23-08_R8-1633
        173.0Kbp
        4.8Mbp
        ENV_MELA_01_07-23-08_R8-1633_1
        20.5%
        52%
        229 bp
        0.9
        ENV_MELA_01_07-23-08_R8-1633_2
        18.4%
        52%
        216 bp
        0.9
        ENV_MELA_01_09-10-08_R8-2233
        410.6Kbp
        4.8Mbp
        ENV_MELA_01_09-10-08_R8-2233_1
        25.2%
        52%
        231 bp
        1.2
        ENV_MELA_01_09-10-08_R8-2233_2
        24.5%
        52%
        227 bp
        1.2
        ENV_MELA_01_10-02-07_R6-0938
        217.8Kbp
        4.9Mbp
        ENV_MELA_01_10-02-07_R6-0938_1
        23.7%
        52%
        225 bp
        1.2
        ENV_MELA_01_10-02-07_R6-0938_2
        22.2%
        52%
        213 bp
        1.2
        ENV_MELA_01_10-22-08_R8-2829
        207.1Kbp
        4.8Mbp
        ENV_MELA_01_10-22-08_R8-2829_1
        24.6%
        52%
        237 bp
        1.1
        ENV_MELA_01_10-22-08_R8-2829_2
        21.3%
        52%
        218 bp
        1.1
        ENV_MELA_01_NA-NA-NA_R8-0346
        240.4Kbp
        4.8Mbp
        ENV_MELA_01_NA-NA-NA_R8-0346_1
        19.8%
        52%
        213 bp
        0.9
        ENV_MELA_01_NA-NA-NA_R8-0346_2
        18.8%
        52%
        207 bp
        0.9
        ENV_MELA_11_07-18-08_R8-1626
        140.7Kbp
        4.8Mbp
        ENV_MELA_11_07-18-08_R8-1626_1
        22.0%
        52%
        230 bp
        1.0
        ENV_MELA_11_07-18-08_R8-1626_2
        19.9%
        52%
        219 bp
        1.0
        ENV_MELA_11_08-25-08_R8-2010
        94.0Kbp
        4.8Mbp
        ENV_MELA_11_08-25-08_R8-2010_1
        17.1%
        52%
        230 bp
        0.7
        ENV_MELA_11_08-25-08_R8-2010_2
        12.9%
        52%
        200 bp
        0.7
        ENV_MELA_11_09-28-08_R8-2244
        134.7Kbp
        4.8Mbp
        ENV_MELA_11_09-28-08_R8-2244_1
        20.2%
        52%
        218 bp
        1.0
        ENV_MELA_11_09-28-08_R8-2244_2
        17.5%
        52%
        202 bp
        1.0
        ENV_MELA_11_10-30-08_R8-2834
        303.3Kbp
        4.8Mbp
        ENV_MELA_11_10-30-08_R8-2834_1
        19.1%
        52%
        235 bp
        0.8
        ENV_MELA_11_10-30-08_R8-2834_2
        17.7%
        52%
        224 bp
        0.8
        ENV_MELA_11_10-30-08_R8-2836
        151.9Kbp
        4.8Mbp
        ENV_MELA_11_10-30-08_R8-2836_1
        17.2%
        52%
        233 bp
        0.7
        ENV_MELA_11_10-30-08_R8-2836_2
        15.5%
        52%
        220 bp
        0.7
        ENV_MELA_11_10-31-07_R6-0801
        76.2Kbp
        4.8Mbp
        ENV_MELA_11_10-31-07_R6-0801_1
        17.1%
        52%
        223 bp
        0.7
        ENV_MELA_11_10-31-07_R6-0801_2
        14.9%
        52%
        207 bp
        0.7
        ENV_MINN_62_09-03-08_R8-2025
        170.0Kbp
        4.5Mbp
        ENV_MINN_62_09-03-08_R8-2025_1
        24.9%
        52%
        227 bp
        1.2
        ENV_MINN_62_09-03-08_R8-2025_2
        23.0%
        52%
        217 bp
        1.2
        ENV_NEWP_17_02-12-08_R8-0341
        352.0Kbp
        5.0Mbp
        ENV_NEWP_17_02-12-08_R8-0341_1
        22.7%
        52%
        228 bp
        0.6
        ENV_NEWP_17_02-12-08_R8-0341_2
        20.3%
        52%
        214 bp
        0.6
        ENV_NEWP_17_02-12-08_R8-0342
        496.1Kbp
        5.0Mbp
        ENV_NEWP_17_02-12-08_R8-0342_1
        23.2%
        52%
        222 bp
        1.0
        ENV_NEWP_17_02-12-08_R8-0342_2
        22.6%
        52%
        217 bp
        1.0
        ENV_NEWP_35_07-23-08_R8-1638
        115.6Kbp
        4.9Mbp
        ENV_NEWP_35_07-23-08_R8-1638_1
        21.6%
        52%
        231 bp
        1.0
        ENV_NEWP_35_07-23-08_R8-1638_2
        17.1%
        52%
        206 bp
        1.0
        ENV_NEWP_35_10-02-08_R8-2249
        186.7Kbp
        4.9Mbp
        ENV_NEWP_35_10-02-08_R8-2249_1
        23.2%
        52%
        214 bp
        1.1
        ENV_NEWP_35_10-02-08_R8-2249_2
        13.6%
        51%
        166 bp
        1.1
        ENV_NEWP_35_11-05-08_R8-2843
        55.6Kbp
        4.9Mbp
        ENV_NEWP_35_11-05-08_R8-2843_1
        13.6%
        52%
        226 bp
        0.5
        ENV_NEWP_35_11-05-08_R8-2843_2
        12.2%
        52%
        210 bp
        0.5
        ENV_NEWP_35_12-09-08_R8-3136
        173.2Kbp
        4.9Mbp
        ENV_NEWP_35_12-09-08_R8-3136_1
        24.2%
        51%
        202 bp
        1.1
        ENV_NEWP_35_12-09-08_R8-3136_2
        11.7%
        51%
        146 bp
        1.1
        ENV_NEWP_62_01-22-09_R8-3410
        113.7Kbp
        4.9Mbp
        ENV_NEWP_62_01-22-09_R8-3410_1
        23.9%
        51%
        185 bp
        1.4
        ENV_NEWP_62_01-22-09_R8-3410_2
        19.5%
        51%
        167 bp
        1.4
        ENV_NEWP_62_03-05-09_R8-3442
        401.8Kbp
        4.9Mbp
        ENV_NEWP_62_03-05-09_R8-3442_1
        25.3%
        51%
        200 bp
        1.3
        ENV_NEWP_62_03-05-09_R8-3442_2
        20.3%
        51%
        179 bp
        1.3
        ENV_NEWP_62_05-28-09_R8-4026
        128.6Kbp
        4.9Mbp
        ENV_NEWP_62_05-28-09_R8-4026_1
        16.7%
        52%
        239 bp
        0.6
        ENV_NEWP_62_05-28-09_R8-4026_2
        14.7%
        52%
        222 bp
        0.6
        ENV_NEWP_62_12-11-08_R8-3137
        85.5Kbp
        4.9Mbp
        ENV_NEWP_62_12-11-08_R8-3137_1
        18.9%
        52%
        208 bp
        0.9
        ENV_NEWP_62_12-11-08_R8-3137_2
        16.4%
        52%
        192 bp
        0.9
        ENV_NEWP_62_12-11-08_R8-3139
        344.8Kbp
        4.9Mbp
        ENV_NEWP_62_12-11-08_R8-3139_1
        27.1%
        52%
        197 bp
        1.6
        ENV_NEWP_62_12-11-08_R8-3139_2
        25.3%
        52%
        188 bp
        1.6
        ENV_TCOP_25_04-01-08_R8-0896
        75.8Kbp
        5.1Mbp
        ENV_TCOP_25_04-01-08_R8-0896_1
        22.5%
        52%
        218 bp
        1.3
        ENV_TCOP_25_04-01-08_R8-0896_2
        21.6%
        52%
        211 bp
        1.3
        ENV_TCOP_25_04-01-08_R8-0898
        48.2Kbp
        5.1Mbp
        ENV_TCOP_25_04-01-08_R8-0898_1
        16.7%
        52%
        223 bp
        0.8
        ENV_TCOP_25_04-01-08_R8-0898_2
        14.9%
        52%
        209 bp
        0.8
        ENV_TCOP_25_07-01-08_R8-1623
        166.2Kbp
        5.1Mbp
        ENV_TCOP_25_07-01-08_R8-1623_1
        10.0%
        52%
        231 bp
        0.4
        ENV_TCOP_25_07-01-08_R8-1623_2
        9.3%
        52%
        222 bp
        0.4
        ENV_TCOP_25_07-29-08_R8-1642
        73.5Kbp
        5.2Mbp
        ENV_TCOP_25_07-29-08_R8-1642_1
        17.5%
        52%
        232 bp
        0.8
        ENV_TCOP_25_07-29-08_R8-1642_2
        16.1%
        52%
        223 bp
        0.8
        ENV_TCOP_25_09-03-08_R8-2017
        98.2Kbp
        5.1Mbp
        ENV_TCOP_25_09-03-08_R8-2017_1
        19.6%
        52%
        229 bp
        0.9
        ENV_TCOP_25_09-03-08_R8-2017_2
        17.8%
        52%
        217 bp
        0.9
        ENV_TYPH_22_01-18-08_R8-0174
        178.4Kbp
        4.7Mbp
        ENV_TYPH_22_01-18-08_R8-0174_1
        19.6%
        52%
        206 bp
        0.9
        ENV_TYPH_22_01-18-08_R8-0174_2
        18.8%
        52%
        199 bp
        0.9
        ENV_TYPH_22_03-14-08_R8-0820
        70.4Kbp
        4.7Mbp
        ENV_TYPH_22_03-14-08_R8-0820_1
        19.7%
        52%
        220 bp
        1.0
        ENV_TYPH_22_03-14-08_R8-0820_2
        18.4%
        52%
        211 bp
        1.0
        ENV_TYPH_22_12-17-07_R8-0171
        145.3Kbp
        4.7Mbp
        ENV_TYPH_22_12-17-07_R8-0171_1
        21.5%
        52%
        225 bp
        1.0
        ENV_TYPH_22_12-17-07_R8-0171_2
        18.3%
        52%
        205 bp
        1.0
        ENV_TYPH_25_03-07-08_R8-0812
        202.2Kbp
        5.0Mbp
        ENV_TYPH_25_03-07-08_R8-0812_1
        19.2%
        52%
        225 bp
        0.9
        ENV_TYPH_25_03-07-08_R8-0812_2
        17.5%
        52%
        215 bp
        0.9
        ENV_TYPH_25_05-01-08_R8-1385
        11.9Kbp
        5.1Mbp
        ENV_TYPH_25_05-01-08_R8-1385_1
        28.8%
        50%
        196 bp
        1.6
        ENV_TYPH_25_05-01-08_R8-1385_2
        19.7%
        50%
        163 bp
        1.6
        ENV_TYPH_25_07-01-08_R8-1621
        225.9Kbp
        5.1Mbp
        ENV_TYPH_25_07-01-08_R8-1621_1
        17.3%
        52%
        208 bp
        0.8
        ENV_TYPH_25_07-01-08_R8-1621_2
        16.0%
        52%
        200 bp
        0.8
        ENV_TYPH_25_07-01-08_R8-1622
        225.9Kbp
        5.1Mbp
        ENV_TYPH_25_07-01-08_R8-1622_1
        27.1%
        52%
        218 bp
        1.5
        ENV_TYPH_25_07-01-08_R8-1622_2
        23.2%
        52%
        201 bp
        1.5
        ENV_TYPH_25_10-19-07_R6-0792
        207.9Kbp
        4.9Mbp
        ENV_TYPH_25_10-19-07_R6-0792_1
        20.8%
        51%
        228 bp
        1.0
        ENV_TYPH_25_10-19-07_R6-0792_2
        18.4%
        51%
        214 bp
        1.0
        ENV_TYPH_25_10-19-07_R6-0793
        191.7Kbp
        4.9Mbp
        ENV_TYPH_25_10-19-07_R6-0793_1
        23.2%
        52%
        225 bp
        1.2
        ENV_TYPH_25_10-19-07_R6-0793_2
        20.2%
        52%
        207 bp
        1.2
        ENV_TYPH_25_10-19-07_R6-0794
        127.0Kbp
        4.9Mbp
        ENV_TYPH_25_10-19-07_R6-0794_1
        15.0%
        52%
        218 bp
        0.6
        ENV_TYPH_25_10-19-07_R6-0794_2
        14.3%
        52%
        209 bp
        0.6

        QUAST

        QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.

        Assembly Statistics

        Showing 128/128 rows and 6/6 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)
        BOV_ANAT_39_02-21-08_R8-0842
        59.3Kbp
        31.3Kbp
        0.0K
        50.0K
        264.8Kbp
        4.7Mbp
        BOV_ANAT_39_02-21-08_R8-0847
        77.6Kbp
        41.0Kbp
        0.0K
        42.0K
        173.9Kbp
        4.7Mbp
        BOV_ANAT_56_04-19-08_R8-0968
        95.6Kbp
        61.1Kbp
        0.0K
        32.0K
        262.7Kbp
        4.9Mbp
        BOV_ANAT_56_04-19-08_R8-0969
        251.4Kbp
        131.9Kbp
        0.0K
        16.0K
        396.8Kbp
        4.8Mbp
        BOV_CERO_35_10-02-08_R8-2685
        218.9Kbp
        132.4Kbp
        0.0K
        14.0K
        506.1Kbp
        4.7Mbp
        BOV_CERO_62_11-12-08_R8-2903
        268.8Kbp
        132.4Kbp
        0.0K
        13.0K
        622.5Kbp
        4.7Mbp
        BOV_KENT_14_11-06-07_R6-0942
        334.9Kbp
        107.1Kbp
        0.0K
        11.0K
        717.4Kbp
        4.7Mbp
        BOV_KENT_14_12-13-07_R8-0083
        234.0Kbp
        97.6Kbp
        0.0K
        16.0K
        513.9Kbp
        4.7Mbp
        BOV_KENT_16_02-13-08_R8-0836
        301.3Kbp
        149.0Kbp
        0.0K
        10.0K
        717.7Kbp
        4.7Mbp
        BOV_KENT_16_02-13-08_R8-0838
        218.9Kbp
        108.7Kbp
        0.0K
        16.0K
        408.6Kbp
        4.7Mbp
        BOV_KENT_16_04-03-08_R8-0967
        167.9Kbp
        59.4Kbp
        0.0K
        22.0K
        440.0Kbp
        4.7Mbp
        BOV_KENT_16_05-21-08_R8-1485
        484.7Kbp
        163.1Kbp
        0.0K
        8.0K
        745.8Kbp
        4.7Mbp
        BOV_KENT_17_02-12-08_R8-0823
        244.9Kbp
        148.3Kbp
        0.0K
        11.0K
        717.7Kbp
        4.7Mbp
        BOV_KENT_17_11-07-07_R6-0957
        250.0Kbp
        148.6Kbp
        0.0K
        10.0K
        718.0Kbp
        4.7Mbp
        BOV_KENT_17_12-12-07_R8-0211
        161.5Kbp
        88.6Kbp
        0.0K
        21.0K
        346.0Kbp
        4.7Mbp
        BOV_KENT_19_11-19-07_R6-0966
        244.9Kbp
        157.7Kbp
        0.0K
        12.0K
        515.0Kbp
        4.7Mbp
        BOV_KENT_42_03-13-08_R8-0863
        408.3Kbp
        218.9Kbp
        0.0K
        8.0K
        745.8Kbp
        4.8Mbp
        BOV_MELA_01_10-02-07_R6-0951
        244.9Kbp
        209.3Kbp
        0.0K
        11.0K
        682.8Kbp
        4.8Mbp
        BOV_MELA_01_10-30-07_R6-0802
        336.5Kbp
        215.8Kbp
        0.0K
        9.0K
        712.0Kbp
        4.8Mbp
        BOV_MELA_01_10-30-07_R6-0803
        207.1Kbp
        116.8Kbp
        0.0K
        16.0K
        455.4Kbp
        4.8Mbp
        BOV_MELA_01_10-30-07_R6-0810
        208.4Kbp
        103.5Kbp
        0.0K
        15.0K
        795.7Kbp
        4.8Mbp
        BOV_MELA_01_12-11-07_R8-0198
        240.4Kbp
        192.2Kbp
        0.0K
        13.0K
        616.1Kbp
        4.8Mbp
        BOV_NEWP_17_11-07-07_R6-0956
        172.3Kbp
        96.3Kbp
        0.0K
        20.0K
        341.6Kbp
        5.0Mbp
        BOV_NEWP_17_12-12-07_R8-0206
        300.2Kbp
        145.6Kbp
        0.0K
        12.0K
        849.1Kbp
        5.0Mbp
        BOV_NEWP_35_10-02-08_R8-2688
        503.8Kbp
        380.8Kbp
        0.0K
        6.0K
        1251.1Kbp
        4.9Mbp
        BOV_NEWP_62_10-14-08_R8-2874
        496.1Kbp
        260.4Kbp
        0.0K
        7.0K
        1251.3Kbp
        4.9Mbp
        BOV_NEWP_62_11-12-08_R8-2900
        504.2Kbp
        380.7Kbp
        0.0K
        6.0K
        1251.3Kbp
        4.9Mbp
        BOV_TYPH_17_12-12-07_R8-0208
        191.7Kbp
        114.0Kbp
        0.0K
        15.0K
        430.4Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0227
        214.2Kbp
        128.3Kbp
        0.0K
        14.0K
        719.8Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0228
        107.9Kbp
        58.5Kbp
        0.0K
        26.0K
        388.9Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0229
        75.4Kbp
        45.3Kbp
        0.0K
        40.0K
        223.3Kbp
        4.8Mbp
        BOV_TYPH_22_01-18-08_R8-0231
        95.1Kbp
        63.5Kbp
        0.0K
        29.0K
        329.4Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0271
        275.5Kbp
        149.9Kbp
        0.0K
        12.0K
        719.8Kbp
        4.7Mbp
        BOV_TYPH_22_01-18-08_R8-0273
        187.9Kbp
        91.0Kbp
        0.0K
        15.0K
        719.8Kbp
        4.7Mbp
        BOV_TYPH_22_03-14-08_R8-0865
        216.2Kbp
        107.5Kbp
        0.0K
        15.0K
        719.8Kbp
        4.9Mbp
        BOV_TYPH_25_01-15-08_R8-0233
        126.2Kbp
        80.3Kbp
        0.0K
        27.0K
        361.6Kbp
        5.0Mbp
        BOV_TYPH_25_11-20-07_R6-0978
        143.3Kbp
        74.6Kbp
        0.0K
        25.0K
        292.1Kbp
        5.0Mbp
        BOV_TYPH_25_11-20-07_R6-0979
        266.9Kbp
        149.7Kbp
        0.0K
        14.0K
        512.4Kbp
        4.9Mbp
        BOV_TYPH_25_11-20-07_R6-0983
        81.8Kbp
        42.4Kbp
        0.0K
        39.0K
        199.5Kbp
        5.0Mbp
        ENV_ANAT_39_01-09-08_R8-0187
        403.1Kbp
        272.8Kbp
        0.0K
        7.0K
        1093.8Kbp
        4.7Mbp
        ENV_ANAT_39_02-21-08_R8-0348
        209.1Kbp
        93.0Kbp
        0.0K
        16.0K
        763.8Kbp
        4.7Mbp
        ENV_ANAT_39_04-17-08_R8-0905
        468.8Kbp
        375.1Kbp
        0.0K
        6.0K
        1496.7Kbp
        4.7Mbp
        ENV_ANAT_39_11-13-07_R6-0928
        91.1Kbp
        47.3Kbp
        0.0K
        35.0K
        268.2Kbp
        4.7Mbp
        ENV_ANAT_39_11-13-07_R6-0929
        240.8Kbp
        107.1Kbp
        0.0K
        15.0K
        632.5Kbp
        4.8Mbp
        ENV_ANAT_39_12-03-08_R8-2860
        387.1Kbp
        209.2Kbp
        0.0K
        9.0K
        904.4Kbp
        4.7Mbp
        ENV_ANAT_56_02-22-08_R8-0350
        159.5Kbp
        81.8Kbp
        0.0K
        21.0K
        380.5Kbp
        4.8Mbp
        ENV_ANAT_56_03-25-09_R8-3652
        169.7Kbp
        112.2Kbp
        0.0K
        19.0K
        363.5Kbp
        4.7Mbp
        ENV_ANAT_56_03-25-09_R8-3653
        200.0Kbp
        108.1Kbp
        0.0K
        16.0K
        507.9Kbp
        4.8Mbp
        ENV_ANAT_56_04-18-08_R8-0907
        305.7Kbp
        137.0Kbp
        0.0K
        12.0K
        571.4Kbp
        4.8Mbp
        ENV_ANAT_56_06-12-08_R8-1402
        415.4Kbp
        328.9Kbp
        0.0K
        7.0K
        806.4Kbp
        4.8Mbp
        ENV_CERO_62_01-22-09_R8-3412
        196.6Kbp
        95.4Kbp
        0.0K
        17.0K
        572.6Kbp
        4.7Mbp
        ENV_CERO_62_03-05-09_R8-3445
        166.9Kbp
        81.9Kbp
        0.0K
        21.0K
        344.0Kbp
        4.7Mbp
        ENV_CERO_62_04-16-09_R8-3664
        131.4Kbp
        59.1Kbp
        0.0K
        24.0K
        323.6Kbp
        4.7Mbp
        ENV_CERO_62_05-28-09_R8-4025
        69.4Kbp
        33.8Kbp
        0.0K
        45.0K
        247.1Kbp
        4.7Mbp
        ENV_CERO_62_07-09-09_R8-4030
        142.8Kbp
        77.2Kbp
        0.0K
        21.0K
        321.8Kbp
        4.7Mbp
        ENV_CERO_62_07-22-08_R8-1631
        168.7Kbp
        81.9Kbp
        0.0K
        21.0K
        433.8Kbp
        4.7Mbp
        ENV_CERO_62_07-22-08_R8-1632
        213.2Kbp
        120.4Kbp
        0.0K
        15.0K
        549.9Kbp
        4.7Mbp
        ENV_CERO_62_09-03-08_R8-2026
        222.6Kbp
        139.7Kbp
        0.0K
        13.0K
        622.9Kbp
        4.7Mbp
        ENV_CERO_62_10-14-08_R8-2818
        222.6Kbp
        142.8Kbp
        0.0K
        13.0K
        622.5Kbp
        4.7Mbp
        ENV_CERO_62_11-12-08_R8-2852
        210.3Kbp
        132.4Kbp
        0.0K
        15.0K
        412.3Kbp
        4.7Mbp
        ENV_CERO_62_12-11-08_R8-3138
        213.4Kbp
        95.4Kbp
        0.0K
        15.0K
        622.5Kbp
        4.7Mbp
        ENV_KENT_14_02-14-08_R8-0344
        274.4Kbp
        127.9Kbp
        0.0K
        12.0K
        717.9Kbp
        4.7Mbp
        ENV_KENT_14_08-30-08_R8-2016
        247.8Kbp
        104.4Kbp
        0.0K
        14.0K
        633.6Kbp
        4.7Mbp
        ENV_KENT_14_10-11-07_R6-0798
        144.5Kbp
        71.8Kbp
        0.0K
        23.0K
        259.3Kbp
        4.7Mbp
        ENV_KENT_16_09-09-08_R8-2031
        197.7Kbp
        76.0Kbp
        0.0K
        19.0K
        633.6Kbp
        4.7Mbp
        ENV_KENT_16_11-11-08_R8-2848
        247.7Kbp
        76.0Kbp
        0.0K
        17.0K
        642.5Kbp
        4.7Mbp
        ENV_KENT_16_12-04-07_R8-0061
        29.8Kbp
        18.9Kbp
        0.0K
        92.0K
        192.2Kbp
        4.7Mbp
        ENV_KENT_17_03-11-08_R8-0814
        247.7Kbp
        163.1Kbp
        0.0K
        11.0K
        633.6Kbp
        4.7Mbp
        ENV_KENT_17_03-11-08_R8-0815
        76.6Kbp
        37.6Kbp
        0.0K
        42.0K
        218.9Kbp
        4.8Mbp
        ENV_KENT_17_06-17-08_R8-1405
        265.7Kbp
        218.9Kbp
        0.0K
        10.0K
        745.8Kbp
        4.7Mbp
        ENV_KENT_17_07-27-08_R8-1641
        97.9Kbp
        51.4Kbp
        0.0K
        33.0K
        278.8Kbp
        4.7Mbp
        ENV_KENT_17_09-10-08_R8-2033
        89.8Kbp
        59.0Kbp
        0.0K
        33.0K
        249.1Kbp
        4.7Mbp
        ENV_KENT_17_10-11-07_R6-1000
        97.8Kbp
        62.2Kbp
        0.0K
        27.0K
        287.4Kbp
        4.7Mbp
        ENV_KENT_19_01-16-08_R8-0168
        244.9Kbp
        127.3Kbp
        0.0K
        12.0K
        642.6Kbp
        4.7Mbp
        ENV_KENT_19_03-13-08_R8-0817
        107.7Kbp
        71.3Kbp
        0.0K
        27.0K
        328.7Kbp
        4.7Mbp
        ENV_KENT_19_04-28-08_R8-0916
        250.1Kbp
        128.2Kbp
        0.0K
        11.0K
        717.9Kbp
        4.7Mbp
        ENV_KENT_19_04-28-08_R8-0917
        265.8Kbp
        218.9Kbp
        0.0K
        10.0K
        745.8Kbp
        4.7Mbp
        ENV_KENT_19_07-21-08_R8-1644
        205.5Kbp
        77.5Kbp
        0.0K
        21.0K
        377.2Kbp
        4.7Mbp
        ENV_KENT_19_10-02-08_R8-2813
        127.9Kbp
        64.5Kbp
        0.0K
        27.0K
        312.6Kbp
        4.7Mbp
        ENV_KENT_42_01-17-08_R8-0191
        191.5Kbp
        97.5Kbp
        0.0K
        18.0K
        506.0Kbp
        4.7Mbp
        ENV_KENT_42_04-23-08_R8-0913
        433.4Kbp
        237.5Kbp
        0.0K
        8.0K
        745.8Kbp
        4.7Mbp
        ENV_KENT_42_04-23-08_R8-0914
        484.6Kbp
        163.1Kbp
        0.0K
        8.0K
        745.8Kbp
        4.7Mbp
        ENV_KENT_42_07-23-08_R8-1640
        150.2Kbp
        76.0Kbp
        0.0K
        22.0K
        368.6Kbp
        4.7Mbp
        ENV_KENT_42_08-19-08_R8-2009
        197.8Kbp
        102.7Kbp
        0.0K
        17.0K
        435.8Kbp
        4.7Mbp
        ENV_KENT_42_09-17-08_R8-2236
        206.4Kbp
        89.0Kbp
        0.0K
        18.0K
        484.6Kbp
        4.7Mbp
        ENV_KENT_42_11-15-07_R6-0935
        228.1Kbp
        148.7Kbp
        0.0K
        12.0K
        745.8Kbp
        4.7Mbp
        ENV_MELA_01_01-10-08_R8-0165
        211.8Kbp
        105.0Kbp
        0.0K
        16.0K
        550.7Kbp
        4.8Mbp
        ENV_MELA_01_04-04-08_R8-0901
        173.8Kbp
        62.7Kbp
        0.0K
        23.0K
        366.3Kbp
        4.8Mbp
        ENV_MELA_01_05-08-08_R8-1381
        411.2Kbp
        158.7Kbp
        0.0K
        9.0K
        641.2Kbp
        4.8Mbp
        ENV_MELA_01_06-13-08_R8-1406
        492.5Kbp
        265.1Kbp
        0.0K
        7.0K
        927.7Kbp
        4.8Mbp
        ENV_MELA_01_07-23-08_R8-1633
        173.0Kbp
        92.3Kbp
        0.0K
        19.0K
        429.6Kbp
        4.8Mbp
        ENV_MELA_01_09-10-08_R8-2233
        410.6Kbp
        169.0Kbp
        0.0K
        9.0K
        927.7Kbp
        4.8Mbp
        ENV_MELA_01_10-02-07_R6-0938
        217.8Kbp
        106.8Kbp
        0.0K
        15.0K
        700.7Kbp
        4.9Mbp
        ENV_MELA_01_10-22-08_R8-2829
        207.1Kbp
        107.3Kbp
        0.0K
        16.0K
        428.8Kbp
        4.8Mbp
        ENV_MELA_01_NA-NA-NA_R8-0346
        240.4Kbp
        133.2Kbp
        0.0K
        13.0K
        693.7Kbp
        4.8Mbp
        ENV_MELA_11_07-18-08_R8-1626
        140.7Kbp
        74.4Kbp
        0.0K
        24.0K
        278.7Kbp
        4.8Mbp
        ENV_MELA_11_08-25-08_R8-2010
        94.0Kbp
        47.2Kbp
        0.0K
        31.0K
        371.3Kbp
        4.8Mbp
        ENV_MELA_11_09-28-08_R8-2244
        134.7Kbp
        74.3Kbp
        0.0K
        24.0K
        280.3Kbp
        4.8Mbp
        ENV_MELA_11_10-30-08_R8-2834
        303.3Kbp
        158.0Kbp
        0.0K
        12.0K
        616.4Kbp
        4.8Mbp
        ENV_MELA_11_10-30-08_R8-2836
        151.9Kbp
        81.9Kbp
        0.0K
        18.0K
        787.3Kbp
        4.8Mbp
        ENV_MELA_11_10-31-07_R6-0801
        76.2Kbp
        49.2Kbp
        0.0K
        38.0K
        244.9Kbp
        4.8Mbp
        ENV_MINN_62_09-03-08_R8-2025
        170.0Kbp
        110.8Kbp
        0.0K
        18.0K
        412.8Kbp
        4.5Mbp
        ENV_NEWP_17_02-12-08_R8-0341
        352.0Kbp
        177.3Kbp
        0.0K
        9.0K
        921.7Kbp
        5.0Mbp
        ENV_NEWP_17_02-12-08_R8-0342
        496.1Kbp
        177.2Kbp
        0.0K
        7.0K
        1100.0Kbp
        5.0Mbp
        ENV_NEWP_35_07-23-08_R8-1638
        115.6Kbp
        54.2Kbp
        0.0K
        28.0K
        310.3Kbp
        4.9Mbp
        ENV_NEWP_35_10-02-08_R8-2249
        186.7Kbp
        78.2Kbp
        0.0K
        20.0K
        383.3Kbp
        4.9Mbp
        ENV_NEWP_35_11-05-08_R8-2843
        55.6Kbp
        28.7Kbp
        0.0K
        58.0K
        221.6Kbp
        4.9Mbp
        ENV_NEWP_35_12-09-08_R8-3136
        173.2Kbp
        80.2Kbp
        0.0K
        22.0K
        379.8Kbp
        4.9Mbp
        ENV_NEWP_62_01-22-09_R8-3410
        113.7Kbp
        74.0Kbp
        0.0K
        28.0K
        375.3Kbp
        4.9Mbp
        ENV_NEWP_62_03-05-09_R8-3442
        401.8Kbp
        159.7Kbp
        0.0K
        10.0K
        1173.1Kbp
        4.9Mbp
        ENV_NEWP_62_05-28-09_R8-4026
        128.6Kbp
        58.9Kbp
        0.0K
        27.0K
        323.4Kbp
        4.9Mbp
        ENV_NEWP_62_12-11-08_R8-3137
        85.5Kbp
        45.2Kbp
        0.0K
        38.0K
        220.9Kbp
        4.9Mbp
        ENV_NEWP_62_12-11-08_R8-3139
        344.8Kbp
        89.7Kbp
        0.0K
        13.0K
        1103.5Kbp
        4.9Mbp
        ENV_TCOP_25_04-01-08_R8-0896
        75.8Kbp
        41.0Kbp
        0.0K
        48.0K
        244.6Kbp
        5.1Mbp
        ENV_TCOP_25_04-01-08_R8-0898
        48.2Kbp
        25.9Kbp
        0.0K
        66.0K
        192.3Kbp
        5.1Mbp
        ENV_TCOP_25_07-01-08_R8-1623
        166.2Kbp
        91.2Kbp
        0.0K
        17.0K
        608.3Kbp
        5.1Mbp
        ENV_TCOP_25_07-29-08_R8-1642
        73.5Kbp
        36.6Kbp
        0.0K
        48.0K
        246.7Kbp
        5.2Mbp
        ENV_TCOP_25_09-03-08_R8-2017
        98.2Kbp
        47.7Kbp
        0.0K
        32.0K
        340.4Kbp
        5.1Mbp
        ENV_TYPH_22_01-18-08_R8-0174
        178.4Kbp
        92.9Kbp
        0.0K
        18.0K
        430.2Kbp
        4.7Mbp
        ENV_TYPH_22_03-14-08_R8-0820
        70.4Kbp
        37.8Kbp
        0.0K
        44.0K
        191.7Kbp
        4.7Mbp
        ENV_TYPH_22_12-17-07_R8-0171
        145.3Kbp
        65.2Kbp
        0.0K
        24.0K
        429.6Kbp
        4.7Mbp
        ENV_TYPH_25_03-07-08_R8-0812
        202.2Kbp
        81.6Kbp
        0.0K
        17.0K
        460.6Kbp
        5.0Mbp
        ENV_TYPH_25_05-01-08_R8-1385
        11.9Kbp
        5.7Kbp
        0.1K
        284.0K
        54.0Kbp
        5.1Mbp
        ENV_TYPH_25_07-01-08_R8-1621
        225.9Kbp
        91.6Kbp
        0.0K
        16.0K
        659.2Kbp
        5.1Mbp
        ENV_TYPH_25_07-01-08_R8-1622
        225.9Kbp
        91.6Kbp
        0.0K
        16.0K
        659.7Kbp
        5.1Mbp
        ENV_TYPH_25_10-19-07_R6-0792
        207.9Kbp
        91.0Kbp
        0.0K
        16.0K
        453.5Kbp
        4.9Mbp
        ENV_TYPH_25_10-19-07_R6-0793
        191.7Kbp
        74.3Kbp
        0.0K
        20.0K
        453.5Kbp
        4.9Mbp
        ENV_TYPH_25_10-19-07_R6-0794
        127.0Kbp
        61.5Kbp
        0.0K
        27.0K
        275.5Kbp
        4.9Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (eg PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as over represented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all of the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        256 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        No samples found with any adapter contamination > 0.1%

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

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